SRAs:
Survey of Read Archives
What's SRAs? - SRAsって何?
Survey of Read Archives (SRAs) is an index of next-generation sequencing data as yellow pages. Researchers can search and browse records by projects, platforms and species.
SRAs は、公共データベース ( SRA [NCBI], ENA [EBI], DRA [DDBJ] ) に登録された「次世代シーケンサ」データについての目次サイトです。 プロジェクトやプラットフォームごとに各レコードの情報を見ることができます。
Simple Lists - まずは見てみる
Search studies - まずは検索してみる
Search by statistics - 統計値から探す
The number of projects are indicated in "Study Types" table. The totals in "Platforms" and "Species of Samples" are larger than one of "Study Types" because a project can contain some platforms and sample species.
実際のプロジェクト数は"Study Types"に書かれているものです。 "Platforms"や"Species of Samples"のtotalの値は、 複数のプラットフォームで行われた実験が1つのプロジェクトでなされる 場合が多々あり、ダブルカウントしているので、数字が大きくなっています。
2012-05-17 updated.
Study Types
| Whole Genome Sequencing | 5806 |
| Transcriptome Analysis | 1594 |
| Metagenomics | 1152 |
| Epigenetics | 839 |
| Resequencing | 616 |
| Other | 554 |
| RNASeq | 527 |
| Population Genomics | 157 |
| Gene Regulation Study | 66 |
| Cancer Genomics | 39 |
| Exome Sequencing | 36 |
| Pooled Clone Sequencing | 20 |
| Forensic or Paleo-genomics | 6 |
| Synthetic Genomics | 5 |
| Total | 11417 (studies) |
Platform
| Illumina Genome Analyzer II | 3504 |
| 454 GS FLX Titanium | 2705 |
| Illumina HiSeq 2000 | 2089 |
| 454 GS FLX | 1708 |
| Illumina Genome Analyzer | 1133 |
| Illumina Genome Analyzer IIx | 508 |
| 454 GS 20 | 322 |
| AB SOLiD System 3.0 | 171 |
| AB SOLiD 4 System | 77 |
| AB SOLiD System 2.0 | 62 |
| unspecified | 61 |
| Illumina MiSeq | 61 |
| Ion Torrent PGM | 54 |
| AB SOLiD System | 36 |
| PacBio RS | 31 |
| Helicos HeliScope | 24 |
| 454 GS | 16 |
| 454 GS Junior | 13 |
| Complete Genomics | 11 |
| Illumina HiSeq 1000 | 5 |
| AB SOLiD 5500 | 4 |
| AB SOLiD 5500xl | 2 |
| Total | 12597 (studies) |
| Illumina HiSeq 2000 | 62251 |
| Illumina Genome Analyzer II | 42259 |
| 454 GS FLX Titanium | 11412 |
| 454 GS FLX | 8832 |
| Illumina Genome Analyzer | 8548 |
| Illumina Genome Analyzer IIx | 7518 |
| AB SOLiD 4 System | 2401 |
| AB SOLiD System 3.0 | 1504 |
| 454 GS 20 | 676 |
| unspecified | 515 |
| AB SOLiD System 2.0 | 377 |
| Complete Genomics | 368 |
| PacBio RS | 322 |
| Helicos HeliScope | 315 |
| Illumina MiSeq | 214 |
| AB SOLiD System | 158 |
| 454 GS | 139 |
| Ion Torrent PGM | 55 |
| 454 GS Junior | 41 |
| AB SOLiD 5500 | 20 |
| AB SOLiD 5500xl | 12 |
| Illumina HiSeq 1000 | 11 |
| Total | 147948 (experiments) |
Species of samples (top 15)
| Homo sapiens | 1054 |
| unidentified | 885 |
| Mus musculus | 567 |
| Drosophila melanogaster | 243 |
| metagenome sequence | 180 |
| Caenorhabditis elegans | 177 |
| marine metagenome | 157 |
| Escherichia coli str. K-12 substr. MG1655 | 135 |
| Arabidopsis thaliana | 120 |
| soil metagenome | 112 |
| Saccharomyces cerevisiae | 104 |
| Mustela putorius furo | 99 |
| Human rhinovirus A | 88 |
| Plasmodium falciparum | 50 |
| ecological metagenomes | 44 |
| Total | 13437 (studies) |
| Homo sapiens | 66264 |
| unidentified | 8663 |
| Streptococcus pneumoniae | 6609 |
| Mus musculus | 6586 |
| Drosophila melanogaster | 5416 |
| human metagenome | 2718 |
| Danio rerio | 2313 |
| Plasmodium falciparum | 2189 |
| Staphylococcus aureus | 1736 |
| Saccharomyces cerevisiae | 1316 |
| Oryza sativa | 1279 |
| Sus scrofa | 1248 |
| marine metagenome | 1203 |
| Mycobacterium tuberculosis | 1165 |
| Streptococcus pyogenes | 988 |
| Total | 147948 (experiments) |
Search by publications - 文献から探す
→ Publications referring to NGS data
Search by diseases - 疾患から眺める
Links
- Documentation: Metadata of SRA data (by DDBJ) - (Japanese) / (English)
- Kusarinoko : the service provides descriptions of SRA entries in conjunction with their journal abstracts
この作品は、クリエイティブ・コモンズ・ライセンスの下でライセンスされています。
This work is licensed under a Creative Commons Attribution 2.1 Japan License.
Developed by Takeru Nakazato < nakazato at dbcls rois ac jp >